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Authors: Lindroos R1, Dorst MC1, Du K1, Filipovic M2, Keller D3, Ketzef M1, Kozlov AK4, Kumar A2,5, Lindahl M4, Nair AG4, Perez-Fernandez J1, Grillner S1, Silberberg G1, Hellgren Kotaleski J1,4.
Author information: 1 Department of Neuroscience, Nobel Institute for Neurophysiology, Stockholm, Sweden. 2 Bernstein Center Freiburg, University of Freiburg, Freiburg im Breisgau, Germany. 3 Blue Brain Project, Ecole Polytechnique Federale de Lausanne, Geneva, Switzerland. 4 Science for Life Laboratory, School of Electrical Engineering and Computer Science, KTH Royal Institute of Technology, Solna, Sweden. 5 Department Computational Science and Technology, School of Electrical Engineering and Computer Science, KTH Royal Institute of Technology, Stockholm, Sweden.
Corresponding author: Jeanette Hellgren Kotaleski (jeanette@kth.se)
Journal: Frontiers Neural Circuits
Download Url: https://doi.org/10.3389/fncir.2018.00003
Citation: Lindroos R, Dorst MC, Du K, Filipovic M, Keller D, Ketzef M, Kozlov AK, Kumar A, Lindahl M, Nair AG, Perez-Fernandez J, Grillner S, Silberberg G, Hellgren Kotaleski J (2018) Basal Ganglia Neuromodulation Over Multiple Temporal and Structural Scales-Simulations of Direct Pathway MSNs Investigate the Fast Onset of Dopaminergic Effects and Predict the Role of Kv4.2. Front Neural Circuits 12:3. eCollection 2018.
DOI: https://doi.org/10.3389/fncir.2018.00003
Licence: the Creative Commons Attribution (CC BY) license applies for all files. Under this Open Access license anyone may copy, distribute, or reuse the files as long as the authors and the original source are properly cited.
Data and models: data and models used in the paper are available at the links reported below, grouped into the following categories:
Morphology file (in .swc format) used in the paper:
WT-P270-20-14ak_1.03_SGA2-m12 | archiveDownload | 3d_rotationView |
Experimental data used to constrain the single-cell MSN model, digitized manually, from Planert et al. 2013 (frequency-current curves, f-I) and Day et al. 2008 (backpropagating action potential induced Ca transient as function of somatic distance normalized to proximal value, bAP).
f-I (cell 1) | archiveDownload | timelineView |
f-I (cell 2) | archiveDownload | timelineView |
f-I (cell 3) | archiveDownload | timelineView |
f-I (cell 4) | archiveDownload | timelineView |
f-I (cell 5) | archiveDownload | timelineView |
f-I (cell 6) | archiveDownload | timelineView |
f-I (cell 7) | archiveDownload | timelineView |
f-I (cell 8) | archiveDownload | timelineView |
bAP | archiveDownload | timelineView |
[1] Planert H, Berger TK Silberberg G (2013) Membrane properties of striatal direct and indirect pathway neurons in mouse and rat slices and their modulation by dopamine. PLoS One. 2013;8(3):e57054.
[2] Day M, Wokosin D, Plotkin JL, Tian X, Surmeier DJ (2008) Differential excitability and modulation of striatal medium spiny neuron dendrites. J Neurosci. 2008 Nov 5;28(45):11603-14.
Simulations of the single-cell medium spiny neuron model from the article using the BSP Neuron As A Service (NaaS) tool. Recommended current clamp parameters: amp 0.33 nA, tstop 1000 ms (default) or 3000 ms, dur 800 ms (default) or 2800 ms. Models implement dopaminergic modulation of the excitability at fixed dopamine levels, low (DA LO), medium (DA 0.5) and full effect (DA 1.0), as well as transient response to the dynamic dopamine application (DA(T)).
The complete source code of the model together with instructions on how to reproduce Figures 2, 3, 4 and 6 is available on ModelDB (accession number 237653). Rendered figures and experimental data can be accessed at the companion depository on GitHub.com.